{ "_id": "6a12c0e3acfb0bcc41d1dd02", "Package": "R0", "Type": "Package", "Title": "Estimation of R0 and Real-Time Reproduction Number from\nEpidemics", "Version": "1.3-0", "Date": "2023-03-06", "Author": "Pierre-Yves Boelle, Thomas Obadia", "URL": "https://github.com/tobadia/R0", "Maintainer": "Thomas Obadia ", "Description": "Estimation of reproduction numbers for disease outbreak,\nbased on incidence data. The R0 package implements several\ndocumented methods. It is therefore possible to compare\nestimations according to the methods used. Depending on the\nmethods requested by user, basic reproduction number (commonly\ndenoted as R0) or real-time reproduction number (referred to as\nR(t)) is computed, along with a 95% Confidence Interval.\nPlotting outputs will give different graphs depending on the\nmethods requested : basic reproductive number estimations will\nonly show the epidemic curve (collected data) and an adjusted\nmodel, whereas real-time methods will also show the R(t)\nvariations throughout the outbreak time period. Sensitivity\nanalysis tools are also provided, and allow for investigating\neffects of varying Generation Time distribution or time window\non estimates.", "License": "GPL (>= 2)", "LazyLoad": "yes", "RoxygenNote": "7.2.3", "Roxygen": "list(markdown = TRUE)", "Encoding": "UTF-8", "Repository": "https://tobadia.r-universe.dev", "Date/Publication": "2025-02-25 23:16:35 UTC", "RemoteUrl": "https://github.com/tobadia/r0", "RemoteRef": "HEAD", "RemoteSha": "f13028dbe1771d203f064970570ac5a426b80f66", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-24 09:09:05 UTC", "User": "root" }, "MD5sum": "d8bedf30fe85eca67b1649d4830f6075", "_user": "tobadia", "_type": "src", "_file": "R0_1.3-0.tar.gz", "_fileid": "29bf944cb77f0c0eefc61830dd1bfbf079a97a89a3854f19ae68b3d28b6915dc", "_filesize": 252876, "_sha256": "29bf944cb77f0c0eefc61830dd1bfbf079a97a89a3854f19ae68b3d28b6915dc", "_created": "2026-05-24T09:09:05.000Z", "_published": "2026-05-24T09:12:03.045Z", "_distro": "noble", "_jobs": [ { "job": 77585967849, "time": 115, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7183921150" }, { "job": 77585967855, "time": 105, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7183920131" }, { "job": 77585967853, "time": 146, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7183921507" }, { "job": 77585967863, "time": 115, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7183919298" }, { "job": 77585819308, "time": 154, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7183908641" }, { "job": 77585967846, "time": 90, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7183918573" }, { "job": 77585967869, "time": 92, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7183918725" }, { "job": 77585967854, "time": 102, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7183920766" }, { "job": 77585967866, "time": 84, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7183917830" } ], "_buildurl": "https://github.com/r-universe/tobadia/actions/runs/26357126577", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/tobadia/r0", "_commit": { "id": "f13028dbe1771d203f064970570ac5a426b80f66", "author": "Thomas Obadia ", "committer": "GitHub ", "message": "Merge pull request #16 from Bisaloo/lintr042023\n\nSet up static code analysis with lintr and fix lints\n\nEdit TO: how come did this remain in my inbox since then... I really need to find more time in a 24h day... 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of R0 to varying generation time distributions", "topics": [ "sa.GT" ] }, { "page": "sa.time", "title": "Sensitivity of R0 to time estimation windows", "topics": [ "sa.time" ] }, { "page": "sensitivity.analysis", "title": "Sensitivity analysis of basic reproduction ratio to begin/end dates", "topics": [ "sensitivity.analysis" ] }, { "page": "sim.epid", "title": "Epidemic outbreak simulation", "topics": [ "sim.epid" ] }, { "page": "sim.epid.indiv", "title": "Influenza-like illness simulation (individual-based model)", "topics": [ "sim.epid.indiv" ] }, { "page": "smooth.Rt", "title": "Smooth real-time reproduction number over larger time periods", "topics": [ "smooth.Rt" ] } ], "_readme": "https://github.com/tobadia/r0/raw/HEAD/README.md", "_rundeps": [ "MASS" ], "_score": 6.064457989226918, "_indexed": true, "_nocasepkg": "r0", "_universes": [ "tobadia" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.3-0", "date": "2026-05-24T09:10:55.000Z", "distro": "noble", "commit": 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